meanIntensity: Whole-dataset-wide Mean Intensity
In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips
meanIntensity R Documentation
Whole-dataset-wide Mean Intensity
Description
The function takes one single SigDF and computes mean
intensity of all the in-band measurements. This includes all Type-I
in-band measurements and all Type-II probe measurements. Both methylated
and unmethylated alleles are considered. This function outputs a single
numeric for the mean.
Usage
meanIntensity(sdf, mask = TRUE)
Arguments
sdf
a SigDF
mask
whether to mask probes using mask column
Details
Note: mean in this case is more informative than median because
methylation level is mostly bimodal.
Value
mean of all intensities
Examples
sesameDataCache() # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
meanIntensity(sdf)
zwdzwd/sesame documentation built on Dec. 21, 2024, 1:20 p.m.
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| meanIntensity | R Documentation |
Whole-dataset-wide Mean Intensity
Description
The function takes one single SigDF and computes mean
intensity of all the in-band measurements. This includes all Type-I
in-band measurements and all Type-II probe measurements. Both methylated
and unmethylated alleles are considered. This function outputs a single
numeric for the mean.
Usage
meanIntensity(sdf, mask = TRUE)
Arguments
sdf |
a |
mask |
whether to mask probes using mask column |
Details
Note: mean in this case is more informative than median because methylation level is mostly bimodal.
Value
mean of all intensities
Examples
sesameDataCache() # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
meanIntensity(sdf)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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