dyeBiasL: Correct dye bias in by linear scaling.
In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips
dyeBiasL R Documentation
Correct dye bias in by linear scaling.
Description
The function takes a SigDF as input and scale both the Grn and Red
signal to a reference (ref) level. If the reference level is not given, it
is set to the mean intensity of all the in-band signals. The function
returns a SigDF with dye bias corrected.
Usage
dyeBiasL(sdf, ref = NULL)
Arguments
sdf
a SigDF
ref
reference signal level
Value
a normalized SigDF
Examples
sesameDataCache() # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
sdf.db <- dyeBiasL(sdf)
zwdzwd/sesame documentation built on Dec. 21, 2024, 1:20 p.m.
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| dyeBiasL | R Documentation |
Correct dye bias in by linear scaling.
Description
The function takes a SigDF as input and scale both the Grn and Red
signal to a reference (ref) level. If the reference level is not given, it
is set to the mean intensity of all the in-band signals. The function
returns a SigDF with dye bias corrected.
Usage
dyeBiasL(sdf, ref = NULL)
Arguments
sdf |
a |
ref |
reference signal level |
Value
a normalized SigDF
Examples
sesameDataCache() # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
sdf.db <- dyeBiasL(sdf)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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