KYCG_plotSetEnrichment: Plot Set Enrichment
In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips
KYCG_plotSetEnrichment R Documentation
Plot Set Enrichment
Description
Plot Set Enrichment
Usage
KYCG_plotSetEnrichment(result, n_sample = 1000, n_presence = 200)
Arguments
result
result object as returned from an element of the list of
testEnrichmentSEA(..., prepPlot=TRUE)
n_sample
number of CpGs to sample
n_presence
number of overlap to sample for the plot
Value
grid object for plot
Examples
query <- KYCG_getDBs("KYCG.MM285.designGroup")[["VMR"]]
db <- KYCG_getDBs("MM285.seqContextN", "distToTSS")
res <- testEnrichmentSEA(query, db, prepPlot = TRUE)
KYCG_plotSetEnrichment(res[[1]])
zwdzwd/sesame documentation built on Nov. 11, 2024, 9:33 a.m.
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| KYCG_plotSetEnrichment | R Documentation |
Plot Set Enrichment
Description
Plot Set Enrichment
Usage
KYCG_plotSetEnrichment(result, n_sample = 1000, n_presence = 200)
Arguments
result |
result object as returned from an element of the list of testEnrichmentSEA(..., prepPlot=TRUE) |
n_sample |
number of CpGs to sample |
n_presence |
number of overlap to sample for the plot |
Value
grid object for plot
Examples
query <- KYCG_getDBs("KYCG.MM285.designGroup")[["VMR"]]
db <- KYCG_getDBs("MM285.seqContextN", "distToTSS")
res <- testEnrichmentSEA(query, db, prepPlot = TRUE)
KYCG_plotSetEnrichment(res[[1]])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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