aggregateTestEnrichments: Aggregate test enrichment results
In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips

aggregateTestEnrichments

R Documentation

Aggregate test enrichment results

Description

Aggregate test enrichment results

Usage

aggregateTestEnrichments(result_list, column = "estimate", return_df = FALSE)

Arguments

`result_list`	a list of results from testEnrichment
`column`	the column name to aggregate (Default: estimate)
`return_df`	whether to return a merged data frame

Value

a matrix for all results

Examples


## pick some big TFBS-overlapping CpG groups
cg_lists <- KYCG_getDBs("MM285.TFBS")
queries <- cg_lists[(sapply(cg_lists, length) > 40000)]
result_list <- lapply(queries, testEnrichment, "MM285.chromHMM")
mtx <- aggregateTestEnrichments(result_list)

zwdzwd/sesame documentation built on April 28, 2024, 12:48 p.m.