sesameQC_rankStats: This function compares the input sample with public data....

In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips

This function compares the input sample with public data. Only overlapping metrics will be compared.

Description

This function compares the input sample with public data. Only overlapping metrics will be compared.

Usage

sesameQC_rankStats(qc, publicQC = NULL, platform = "EPIC")

Arguments

qc	a sesameQC object
publicQC	public QC statistics, filtered from e.g.: EPIC.publicQC, MM285.publicQC and Mammal40.publicQC
platform	EPIC, MM285 or Mammal40, used when publicQC is not given

Value

a sesameQC

Examples

sesameDataCache() # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
sesameQC_rankStats(sesameQC_calcStats(sdf, "intensity"))

zwdzwd/sesame documentation built on April 28, 2024, 12:48 p.m.