sesameAnno_buildManifestGRanges: Build manifest GRanges from tsv
In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips

sesameAnno_buildManifestGRanges

R Documentation

Build manifest GRanges from tsv

Description

manifest tsv files can be downloaded from http://zwdzwd.github.io/InfiniumAnnotation

Usage

sesameAnno_buildManifestGRanges(
  tsv,
  genome = NULL,
  decoy = FALSE,
  columns = NULL
)

Arguments

`tsv`	a file path, a platform (e.g., EPIC), or a tibble/data.frame object
`genome`	a genome string, e.g., hg38, mm10
`decoy`	consider decoy sequence in chromosome order
`columns`	the columns to include in the GRanges

Value

GRanges

Examples

## Not run: 
tsv = sesameAnno_download("HM450.hg38.manifest.tsv.gz")
gr <- sesameAnno_buildManifestGRanges(tsv)
## direct access
gr <- sesameAnno_buildManifestGRanges("HM450.hg38.manifest")

## End(Not run)

zwdzwd/sesame documentation built on Nov. 11, 2024, 9:33 a.m.