sesameQC_plotHeatSNPs: Plot SNP heatmap

View source: R/QC.R

sesameQC_plotHeatSNPsR Documentation

Plot SNP heatmap

Description

Plot SNP heatmap

Usage

sesameQC_plotHeatSNPs(sdfs, cluster = TRUE, filter.nonvariant = TRUE)

Arguments

sdfs

beta value matrix, row: probes; column: samples

cluster

show clustered heatmap

filter.nonvariant

whether to filter nonvariant (range < 0.3)

Value

a grid graphics object

Examples


sdfs <- sesameDataGet("EPIC.5.SigDF.normal")[1:2]
plt <- sesameQC_plotHeatSNPs(sdfs, filter.nonvariant = FALSE)

zwdzwd/sesame documentation built on Nov. 11, 2024, 9:33 a.m.