sesameQC_plotHeatSNPs: Plot SNP heatmap
In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips
sesameQC_plotHeatSNPs R Documentation
Plot SNP heatmap
Description
Plot SNP heatmap
Usage
sesameQC_plotHeatSNPs(sdfs, cluster = TRUE, filter.nonvariant = TRUE)
Arguments
sdfs
beta value matrix, row: probes; column: samples
cluster
show clustered heatmap
filter.nonvariant
whether to filter nonvariant (range < 0.3)
Value
a grid graphics object
Examples
sdfs <- sesameDataGet("EPIC.5.SigDF.normal")[1:2]
plt <- sesameQC_plotHeatSNPs(sdfs, filter.nonvariant = FALSE)
zwdzwd/sesame documentation built on April 28, 2024, 12:48 p.m.
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| sesameQC_plotHeatSNPs | R Documentation |
Plot SNP heatmap
Description
Plot SNP heatmap
Usage
sesameQC_plotHeatSNPs(sdfs, cluster = TRUE, filter.nonvariant = TRUE)
Arguments
sdfs |
beta value matrix, row: probes; column: samples |
cluster |
show clustered heatmap |
filter.nonvariant |
whether to filter nonvariant (range < 0.3) |
Value
a grid graphics object
Examples
sdfs <- sesameDataGet("EPIC.5.SigDF.normal")[1:2]
plt <- sesameQC_plotHeatSNPs(sdfs, filter.nonvariant = FALSE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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