testEnrichmentGene: Convenient function for testing enrichment of gene linkage

In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Convenient function for testing enrichment of gene linkage

Description

Convenient function for testing enrichment of gene linkage

Usage

testEnrichmentGene(query, platform = NULL, silent = FALSE, ...)

Arguments

query	probe set of interest
platform	string corresponding to the type of platform to use. Either MM285, EPIC, HM450, or HM27. If it is not provided, it will be inferred from the query set probe IDs.
silent	whether to output message
...	addition argument provided to testEnrichment

Value

A data frame containing features corresponding to the test estimate, p-value, and type of test etc.

Examples

query <- c("cg04707299", "cg13380562", "cg00480749")
testEnrichment(query, platform = "EPIC")

zwdzwd/sesame documentation built on April 28, 2024, 12:48 p.m.