updateSigDF: Set color and mask using strain/species-specific manifest

In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Set color and mask using strain/species-specific manifest

Description

also sets attr(,"species")

Usage

updateSigDF(sdf, species = NULL, strain = NULL, addr = NULL, verbose = FALSE)

Arguments

sdf	a SigDF
species	the species the sample is considered to be
strain	the strain the sample is considered to be
addr	species-specific address species, optional
verbose	print more messages

Value

a SigDF with updated color channel and mask

Examples

sdf <- sesameDataGet('Mammal40.1.SigDF')
sdf_mouse <- updateSigDF(sdf, species="mus_musculus")

zwdzwd/sesame documentation built on Jan. 8, 2025, 4:50 a.m.