probeSuccessRate: Whole-dataset-wide Probe Success Rate
In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips
probeSuccessRate R Documentation
Whole-dataset-wide Probe Success Rate
Description
This function calculates the probe success rate using
pOOBAH detection p-values. Probes that has a detection p-value
higher than a specific threshold are considered failed probes.
Usage
probeSuccessRate(sdf, mask = TRUE, max_pval = 0.05)
Arguments
sdf
a SigDF
mask
whether or not we count the masked probes in SigDF
max_pval
the maximum p-value to consider detection success
Value
a fraction number as probe success rate
Examples
sesameDataCache() # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
probeSuccessRate(sdf)
zwdzwd/sesame documentation built on Dec. 21, 2024, 1:20 p.m.
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| probeSuccessRate | R Documentation |
Whole-dataset-wide Probe Success Rate
Description
This function calculates the probe success rate using pOOBAH detection p-values. Probes that has a detection p-value higher than a specific threshold are considered failed probes.
Usage
probeSuccessRate(sdf, mask = TRUE, max_pval = 0.05)
Arguments
sdf |
a |
mask |
whether or not we count the masked probes in SigDF |
max_pval |
the maximum p-value to consider detection success |
Value
a fraction number as probe success rate
Examples
sesameDataCache() # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
probeSuccessRate(sdf)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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