sesameQC_plotBetaByDesign: Plot betas distinguishing different Infinium chemistries

In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Plot betas distinguishing different Infinium chemistries

Description

Plot betas distinguishing different Infinium chemistries

Usage

sesameQC_plotBetaByDesign(
  sdf,
  prep = NULL,
  legend_pos = "top",
  mar = c(3, 3, 1, 1),
  main = "",
  ...
)

Arguments

sdf	SigDF
prep	prep codes to step through
legend_pos	legend position (default: top)
mar	margin of layout when showing steps of prep
main	main title in plots
...	additional options to plot

Value

create a density plot

Examples

sdf <- sesameDataGet("EPIC.1.SigDF")
sesameQC_plotBetaByDesign(sdf, prep="DB")

zwdzwd/sesame documentation built on April 28, 2024, 12:48 p.m.