KYCG_plotBar: Bar plot to show most enriched CG groups from testEnrichment

In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips

Bar plot to show most enriched CG groups from testEnrichment

Description

The input data frame should have an "estimate" and a "FDR" columns.

Usage

KYCG_plotBar(df, y = "-log10(FDR)", n = 20, order_by = "FDR", label = FALSE)

Arguments

df	KYCG result data frame
y	the column to be plotted on y-axis
n	number of CG groups to plot
order_by	the column by which CG groups are ordered
label	whether to label significant bars

Details

Top CG groups are determined by estimate (descending order).

Value

grid plot object

Examples

KYCG_plotBar(data.frame(
  estimate=runif(10,0,10), FDR=runif(10,0,1), nD=10,
  overlap=as.integer(runif(10,0,30)), group="g", dbname=seq_len(10)))

zwdzwd/sesame documentation built on April 28, 2024, 12:48 p.m.