sesameQC_calcStats: Calculate QC statistics
In zwdzwd/sesame: SEnsible Step-wise Analysis of DNA MEthylation BeadChips

sesameQC_calcStats

R Documentation

Calculate QC statistics

Description

It is a function to call one or multiple sesameQC_calcStats functions

Usage

sesameQC_calcStats(sdf, funs = NULL)

Arguments

`sdf`	a SigDF object
`funs`	a sesameQC_calcStats_* function or a list of them default to all functions. One can also use a string such as "detection" or c("detection", "intensity") to reduce typing

Details

currently supporting: detection, intensity, numProbes, channel, dyeBias, betas

Value

a sesameQC object

Examples

sesameDataCache() # if not done yet
sdf <- sesameDataGet('EPIC.1.SigDF')
sesameQC_calcStats(sdf)
sesameQC_calcStats(sdf, "detection")
sesameQC_calcStats(sdf, c("detection", "channel"))
## retrieve stats as a list
sesameQC_getStats(sesameQC_calcStats(sdf, "detection"))
## or as data frames
as.data.frame(sesameQC_calcStats(sdf, "detection"))

zwdzwd/sesame documentation built on Dec. 21, 2024, 1:20 p.m.