example_fullSS: Store 'fullSS_dat'

In RajLabMSSM/echodata: echoverse module: Fine-mapping data access and formatting

Store fullSS_dat

Description

Save downsampled genome-wide summary statistics from different GWAS to disk.

Usage

example_fullSS(
  save_dir = tempdir(),
  dataset = c("Nalls2019", "Kunkle2019"),
  nThread = 1,
  verbose = TRUE
)

Arguments

save_dir	Path to save the example summary statistics to. It is usually best to provide the absolute path rather than the relative path.
dataset	Name of the example GWAS dataset to use.
nThread	Number of threads to use.
verbose	Print messages.

Details

• "Nalls2019"Parkinson's Disease GWAS from Nalls et al. 2019 (excluding 23andMe data).

• "Kunkle2019"Alzheimer's Disease GWAS from Kunkle et al. 2019.

Value

Path to saved summary statistics file.

Examples

fullSS_path <- example_fullSS()

RajLabMSSM/echodata documentation built on Nov. 21, 2023, 8 a.m.