ModelDivergence: To create Model Divergence

In MEET: MEET: Motif Elements Estimation Toolkit

Description

From the best parameter, this function, ModelDivergence, calculates the divergence matrix of the set of aligned nucleotide sequences.

Usage

ModelDivergence(iicc)

Arguments

iicc	A set of inicial conditions for the MEET-package

Author(s)

Joan Maynou <[e-mail]>

Examples

data(iicc)
data(BackgroundOrganism)
training.set<-iicc$Transcriptionfactor
val.set<-sample(c('A','T','C','G'),ncol(training.set), replace=TRUE,Prob)
res<-detector_2nOrdre_init(training.set, val.set, iicc)
iicc<-c(iicc,res)
iicc$parametersIdeal<-1
ModelDivergence(iicc)

MEET documentation built on May 2, 2019, 5:52 p.m.