Nothing
yuima.warn <- function(x){
cat(sprintf("\nYUIMA: %s\n", x))
}
# in this source we note formulae like latex
setGeneric("asymptotic_term",
function(yuima,block=100, rho, g, expand.var="e")
standardGeneric("asymptotic_term"))
setMethod("asymptotic_term",signature(yuima="yuima"),
function(yuima,block=100, rho, g, expand.var="e"){
if(is.null(yuima@model)) stop("model object is missing!")
if(is.null(yuima@sampling)) stop("sampling object is missing!")
if(is.null(yuima@functional)) stop("functional object is missing!")
f <- getf(yuima@functional)
F <- getF(yuima@functional)
##:: fix bug 07/23
#e <- gete(yuima@functional)
assign(expand.var, gete(yuima@functional))
Terminal <- yuima@sampling@Terminal[1]
division <- yuima@sampling@n[1]
xinit <- getxinit(yuima@functional)
state <- yuima@model@state.variable
V0 <- yuima@model@drift
V <- yuima@model@diffusion
r.size <- yuima@model@noise.number
d.size <- yuima@model@equation.number
k.size <- length(F)
print("compute X.t0")
X.t0 <- Get.X.t0(yuima, expand.var=expand.var)
delta <- deltat(X.t0)
##:: fix bug 07/23
pars <- expand.var #yuima@model@parameter@all[1] #epsilon
# fix bug 20110628
if(k.size==1){
G <- function(x){
n <- length(x)
res <- numeric(0)
for(i in 1:n){
res <- append(res,g(x[i]))
}
return(res)
}
}else{
G <- function(x) return(g(x))
}
# function to return symbolic derivatives of myfunc by mystate(multi-state)
Derivation.vector <- function(myfunc,mystate,dim1,dim2){
tmp <- vector(dim1*dim2,mode="expression")
for(i in 1:dim1){
for(j in 1:dim2){
tmp[(i-1)*dim2+j] <- parse(text=deparse(D(myfunc[i],mystate[j])))
}
}
return(tmp)
}
# function to return symbolic derivatives of myfunc by mystate(single state)
Derivation.scalar <- function(myfunc,mystate,dim){
tmp <- vector(dim,mode="expression")
for(i in 1:dim){
tmp[i] <- parse(text=deparse(D(myfunc[i],mystate)))
}
return(tmp)
}
# function to solve Y_{t} (between (13.9) and (13.10)) using runge kutta method. Y_{t} is GL(d) valued (matrices)
Get.Y <- function(env){
## init
dt <- env$delta
assign(pars,0) ## epsilon=0
Yinit <- as.vector(diag(d.size))
Yt <- Yinit
Y <- Yinit
k <- numeric(d.size*d.size)
k1 <- numeric(d.size*d.size)
k2 <- numeric(d.size*d.size)
k3 <- numeric(d.size*d.size)
k4 <- numeric(d.size*d.size)
Ystate <- paste("y",1:(d.size*d.size),sep="")
F <- NULL
F.n <- vector(d.size,mode="expression")
for(n in 1:d.size){
for(i in 1:d.size){
F.tmp <- dx.drift[((i-1)*d.size+1):(i*d.size)]
F.n[i] <- parse(text=paste(paste("(",F.tmp,")","*",
Ystate[((n-1)*d.size+1):(n*d.size)],sep=""),
collapse="+"))
}
F <- append(F,F.n)
}
## runge kutta
for(t in 1:(division-1)){
## Xt
for(i in 1:d.size){
assign(state[i],X.t0[t,i]) ## state[i] is x_i, for example.
}
## k1
for(i in 1:(d.size*d.size)){
assign(Ystate[i],Yt[i])
}
for(i in 1:(d.size*d.size)){
k1[i] <- dt*eval(F[i])
}
## k2
for(i in 1:(d.size*d.size)){
assign(Ystate[i],Yt[i]+k1[i]/2)
}
for(i in 1:(d.size*d.size)){
k2[i] <- dt*eval(F[i])
}
## k3
for(i in 1:(d.size*d.size)){
assign(Ystate[i],Yt[i]+k2[i]/2)
}
for(i in 1:(d.size*d.size)){
k3[i] <- dt*eval(F[i])
}
## k4
##modified
## Xt+1
for(i in 1:d.size){
assign(state[i],X.t0[t+1,i])
}
##
for(i in 1:(d.size*d.size)){
assign(Ystate[i],Yt[i]+k3[i])
}
for(i in 1:(d.size*d.size)){
k4[i] <- dt*eval(F[i])
}
## F(Y(t+dt))
k <- (k1+k2+k2+k3+k3+k4)/6
Yt <- Yt+k
Y <- rbind(Y,Yt)
}
## return matrix : (division+1)*(d.size*d.size)
rownames(Y) <- NULL
colnames(Y) <- Ystate
return(ts(Y,deltat=dt,start=0))
}
#l*t
e_F <- function(X.t0,tmp.F,env){
d.size <- env$d.size
k.size <- env$k.size
division <- env$division
result <- matrix(0,k.size,division)
assign(pars[1],0)
de.F <- list()
for(k in 1:k.size){
de.F[[k]] <- parse(text=deparse(D(tmp.F[k],pars[1])))
}
for(t in 1:division){
for(d in 1:d.size){
assign(state[d],X.t0[t,d])
}
for(k in 1:k.size){
result[k,t] <- eval(de.F[[k]])
}
}
return(result)
}
# function to calculate mu in thesis p5
funcmu <- function(e=0,env){
d.size <- env$d.size
k.size <- env$k.size
division <- env$division
delta <- env$delta
n1 <- length(get_e_f0)
n2 <- sum(get_e_f0 == 0)
n3 <- length(get_e_F)
n4 <- sum(get_e_F == 0)
n <- (n1 - n2 != 0) * (n3 - n4 != 0)
if(n == 0){
mu1 <- double(k.size)
}else{
mu1 <- apply(get_e_f0,1,sum) * delta + get_e_F[,division]
}
n5 <- length(get_Y_e_V0)
n6 <- sum(get_Y_e_V0 == 0)
n <- n5 - n6
if(n == 0){
mu2 <- double(k.size)
}else{
n7 <- length(get_x_F)
n8 <- sum(get_x_F == 0)
n <- n7 - n8
if(n == 0){
mu2_1 <- double(k.size)
}else{
mu2_1 <- matrix(get_x_F[,,division],k.size,d.size) %*%
tmpY[,,d.size] %*% matrix(apply(get_Y_e_V0,1,sum),d.size,1) *
delta
}
n9 <- length(get_x_f0)
n10 <- sum(get_x_f0 == 0)
n <- n7 - n8
if(n == 0){
mu2_2 <- double(k.size)
}else{
mu2_2 <- double(k.size)
for(l in 1:k.size){
for(i in 1:d.size){
for(j in 1:d.size){
tmp1 <- I0(get_Y_e_V0[j,],env)
tmp2 <- get_x_f0[l,i,] * tmpY[i,j,] * tmp1
mu2_2[l] <- mu2_2[l] + I0(tmp2,env)
}
}
}
}
mu2 <- mu2_1 + mu2_2
}
mu <- mu1 + mu2
return(mu)
}
# function to calculate a_{s}^{alpha} in bookchapter p5
#k*r*t
funca <- function(e=0,env=env){
d.size <- env$d.size
r.size <- env$r.size
k.size <- env$k.size
division <- env$division
delta <- env$delta
first <- get_e_f
second <- array(0,dim=c(k.size,r.size,division))
second.tmp <- matrix(get_x_F[,,division],k.size,d.size) %*%
tmpY[,,division]
for(t in 1:division){
second[,,t] <- second.tmp %*% matrix(get_Y_e_V[,,t],d.size,r.size)
}
third <- array(0,dim=c(k.size,r.size,division))
third.tmp <- matrix(0,k.size,d.size)
n1 <- length(get_x_f0)
n2 <- sum(get_x_f0 == 0)
n <- n1 - n2
third[,,division] <- 0
if(n != 0){
for(s in (division-1):1){
third.tmp <- third.tmp + matrix(get_x_f0[,,s],k.size,d.size) %*%
tmpY[,,s] * delta
third[,,s] <- third.tmp %*% matrix(get_Y_e_V[,,s],d.size,r.size)
}
}
result <- first + second + third
return(result) #size:array[k.size,r.size,division]
}
# function to calculate sigma in thesis p5
# require: aMat
funcsigma <- function(e=0,env=env){
k.size <- env$k.size
division <- env$division
delta <- env$delta
sigma <- matrix(0,k.size,k.size) #size:matrix[k.size,k.size]
for(t in 1:(division-1)){
a.t <- matrix(aMat[,,t],k.size,r.size)
sigma <- sigma + (a.t %*% t(a.t)) * delta
}
# Singularity check
if(any(eigen(sigma)$value<=0.0001)){
yuima.warn("Eigen value of covariance matrix in very small.")
}
return(sigma)
}
## integrate start:1 end:t number to integrate:block
# because integration at all 0:T takes too much time,
# we sample only 'block' points and use trapezium rule to integrate
make.range.for.trapezium.fomula <- function(t,block){
if(t/block <= 1){ # block >= t : just use all points
range <- c(1:t)
}else{ # make array which includes points to use
range <- as.integer( (c(0:block) * (t/block))+1)
if( range[block+1] < t){
range[block+2] <- t
}else if( range[block+1] > t){
range[block+1] <- t
}
}
return(range)
}
## multi dimension gausian distribusion
normal <- function(x,mu,Sigma){
if(length(x)!=length(mu)){
print("Error:length of x != one of mu")
}
dimension <- length(x)
tmp <- 1/((sqrt(2*pi))^dimension * sqrt(det(Sigma))) * exp(-1/2 * t((x-mu)) %*% solve(Sigma) %*% (x-mu) )
return(tmp)
}
## get d0
##
get.d0.term <- function(){
## get g(z)*pi0(z)
##modified
# gz_pi0 <- function(z){
# return( G(z) * H0 *normal(z,mu=mu,Sigma=Sigma))
# }
gz_pi0 <- function(z){
tmpz <- matA %*% z
return(G(tmpz) * H0 * normal(tmpz,mu=mu,Sigma=Sigma)) #det(matA) = 1
}
##
gz_pi02 <- function(z){
return(G(z) * H0 * dnorm(z,mean=mu,sd=sqrt(Sigma)))
}
## integrate
if( k.size ==1){ # use 'integrate' if k=1
tmp <- integrate(gz_pi02,mu-7*sqrt(Sigma),mu+7*sqrt(Sigma))$value
}else if( 2 <= k.size || k.size <= 20 ){ # use 'cubature' to solve multi-dimentional integration
lambda <- eigen(Sigma)$values
matA <- eigen(Sigma)$vector
lower <- c()
upper <- c()
for(k in 1:k.size){
max <- 7 * sqrt(lambda[k])
lower[k] <- - max
upper[k] <- max
}
# if(require(cubature)){
tmp <- adaptIntegrate(gz_pi0, lowerLimit=lower,upperLimit=upper)$integral
# } else {
# tmp <- NA
#}
}else{
stop("length k is too big.")
}
return(tmp)
}
###############################################################################
# following funcs are part of d1 term
# because they are finally integrated at 'get.d1.term()',
# these funcs are called over and over again.
# so, we use trapezium rule for integration to save time and memory.
# these funcs almost calculate each formulas including trapezium integration.
# see each formulas in thesis to know what these funcs do.
# some funcs do alternative calculation at k=1.
# it depends on 'integrate()' function
###############################################################################
#a:l, b:l*j*r*t/j*r*t, c:l*r*t
#l
ft1_1 <- function(a1,env){
k.size <- env$k.size
result <- a1
return(result)
}
#first:l*k*k, second:l
ft1_2 <- function(b1,env){
d.size <- env$d.size
k.size <- env$k.size
block <- env$block
first <- array(0,dim=c(k.size,k.size,k.size))
second <- double(k.size)
for(l in 1:k.size){
for(j in 1:d.size){
tmp <- I_12(b1[[1]][l,j,,],b1[[2]][j,,],env)
first[l,,] <- first[l,,] + tmp$first[,,block]
second <- second + tmp$second[block]
}
}
return(list(first=first,second=second))
}
#l*k
ft1_3 <- function(c1,env){
k.size <- env$k.size
block <- env$block
result <- matrix(0,k.size,k.size)
for(l in 1:k.size){
tmp <- I_1(c1[l,,],env)
result[l,] <- tmp[,block]
}
return(result)
}
F_tilde1__1 <- function(get_F_tilde1,env){
k.size <- env$k.size
temp <- list()
temp$first <- array(0,dim=c(k.size,k.size,k.size))
temp$second <- matrix(0,k.size,k.size)
temp$third <- double(k.size)
calc.range <- c(1:3)
tmp1 <- get_F_tilde1$result1
n1 <- length(tmp1)
n2 <- sum(tmp1 == 0)
if(n1 == n2){
calc.range <- calc.range[calc.range != 1]
}
tmp2 <- get_F_tilde1$result2[[1]]
n3 <- length(tmp2)
n4 <- sum(tmp2 == 0)
tmp3 <- get_F_tilde1$result2[[2]]
n5 <- length(tmp3)
n6 <- sum(tmp3 == 0)
n <- (n3 - n4 != 0) * (n5 - n6 != 0)
if(n == 0){
calc.range <- calc.range[calc.range != 2]
}
tmp3 <- get_F_tilde1$result3
n7 <- length(tmp3)
n8 <- sum(tmp3 == 0)
if(n7 == n8){
calc.range <- calc.range[calc.range != 3]
}
for(i in calc.range){
tmp <- switch(i,"a","b","c")
result <- switch(tmp,"a"=ft1_1(get_F_tilde1[[i]],env),
"b"=ft1_2(get_F_tilde1[[i]],env),
"c"=ft1_3(get_F_tilde1[[i]],env))
nlist <- length(result)
if(nlist != 2){
tmp1 <- length(dim(result)) #2 or NULL
if(tmp1 == 0){
tmp1 <- 3
}
temp[[tmp1]] <- temp[[tmp1]] + result
}else{
temp[[1]] <- temp[[1]] + result[[1]]
temp[[3]] <- temp[[3]] + result[[2]]
}
}
first <- temp$first
second <- temp$second
third <- temp$third
return(list(first=first,second=second,third=third))
}
F_tilde1_x <- function(l,x){
first <- matrix(get_F_tilde1__1$first[l,,],
k.size,k.size)
result1 <- 0
for(k1 in 1:k.size){
for(k2 in 1:k.size){
result1 <- result1 + first[k1,k2] * x[k1] * x[k2]
}
}
second <- get_F_tilde1__1$second[l,]
result2 <- 0
for(k1 in 1:k.size){
result2 <- result2 + second[k1] * x[k1]
}
result3 <- get_F_tilde1__1$third[l]
result <- result1 + result2 + result3
return(result)
}
#h:d*block
#first:numeric(1), second:r.size*block, third:r.size*block
Di_bar <- function(h,env){
block <- env$block
first <- double(1)
second <- matrix(0,r.size,block)
third <- matrix(0,r.size,block)
tmp4 <- matrix(0,r.size,block)
for(i in 1:d.size){
tmp1 <- h[i,] * get_Y_D[i,]
first <- first + I0(tmp1,env)[block]
for(j in 1:d.size){
tmp2 <- h[i,] * tmpY[i,j,]
tmp3 <- I0(tmp2,env)
second <- second + tmp3[block] * get_Y_e_V[j,,]
for(r in 1:r.size){
tmp4[r,] <- tmp3 * get_Y_e_V[j,r,]
}
third <- third + tmp4
}
}
return(list(first=first,second=second,third=third))
}
Di_bar_x <- function(h,x){
tmp1 <- Di_bar(h,env)
for(r in 1:r.size){
tmp2 <- I_1(tmp1$second[r,],env)
tmp3 <- I_1(tmp1$third[r,],env)
result <- tmp1$first + I_1_x(x,tmp2,env) -
I_1_x(x,tmp3,env)
}
return(result)
}
get.P2 <- function(z){
if(k.size==1){
First <- Di_bar_x(di.rho,z)
Second <- rep(de.rho %*% Diff[block,] * delta ,length(z))
}else{
First <- Di_bar_x(di.rho,z)
Second <- de.rho %*% Diff[block,] * delta
}
tmp <- First + Second
}
# now calculate pi1 using funcs above
get.pi1 <- function(z){
First <- 0
z.tilda <- z - mu
if(k.size ==1){
zlen <- length(z)
result <- c()
for(i in 1:zlen){
First <- (F_tilde1_x(1,z.tilda[i]+delta) *
dnorm(z[i]+delta,mean=mu,sd=sqrt(Sigma)) -
F_tilde1_x(1,z.tilda[i]) *
dnorm(z[i],mean=mu,sd=sqrt(Sigma)))/delta
Second <- get.P2(z.tilda[i]) * dnorm(z[i],mean=mu,sd=sqrt(Sigma))
result[i] <- First + Second
}
}else{
tmp <- numeric(k.size)
for(k in 1:k.size){
dif <- numeric(k.size)
dif[k] <- dif[k] + delta
z.delta <- z.tilda + dif
tmp[k] <- (F_tilde1_x(k,z.delta) * normal(z.delta,numeric(k.size),Sigma) -
F_tilde1_x(k,z.tilda) * normal(z.tilda,numeric(k.size),Sigma))/delta
}
First <- sum(tmp)
Second <- get.P2(z.tilda) * normal(z.tilda,numeric(k.size),Sigma)
result <- First + Second
}
pi1 <- - H0 * result
return(pi1)
}
# calculate d1
##
get.d1.term<- function(){
## get g(z)*pi1(z)
gz_pi1 <- function(z){
tmp <- G(z) * get.pi1(z)
return( tmp )
}
## integrate
if(k.size == 1){ # use 'integrate()'
tmp <- integrate(gz_pi1,mu-7*sqrt(Sigma),mu+7*sqrt(Sigma))$value
}else if(2 <= k.size || k.size <= 20){
lambda <- eigen(Sigma)$values
matA <- eigen(Sigma)$vector
gz_pi1 <- function(z){
tmpz <- matA %*% z
tmp <- G(tmpz) * get.pi1(tmpz) #det(matA) = 1
return( tmp )
}
my.x <- matrix(0,k.size,20^k.size)
dt <- 1
for(k in 1:k.size){
max <- 7 * sqrt(lambda[k])
min <- -7 * sqrt(lambda[k])
tmp.x <- seq(min,max,length=20)
dt <- dt * (tmp.x[2] - tmp.x[1])
my.x[k,] <- rep(tmp.x,each=20^(k.size-k),times=20^(k-1))
}
tmp <- 0
for(i in 1:20^k.size){
tmp <- tmp + gz_pi1(my.x[,i])
}
tmp <- tmp * dt
}else{
stop("length k is too long.")
}
return(tmp)
}
# 'rho' is a given function of (X,e) (p.7 formula(13.19))
# d(rho)/di
get.di.rho <- function(){
assign(pars[1],0)
di.rho <- numeric(d.size)
tmp <- matrix(0,d.size,block+1)
for(i in 1:d.size){
di.rho[i] <- deriv(rho,state[i])
}
for(t in 1:(block+1)){
for(i in 1:d.size){
assign(state[i],X.t0[t,i])
}
for(j in 1:d.size){
tmp[j,t]<- attr(eval(di.rho[j]),"grad")
}
}
return(tmp)
}
# d(rho)/de
get.de.rho <- function(){
assign(pars[1],0)
tmp <- matrix(0,1,block+1)
de.rho <- deriv(rho,pars[1])
for(t in 1:(block+1)){
for(i in 1:d.size){
assign(state[i],X.t0[t,i])
}
tmp[1,t]<- attr(eval(de.rho),"grad")
}
return(tmp)
}
# H_{t}^{e} at t=0 (see formula (13.19))
# use trapezium integration
get.H0 <- function(){
assign(pars[1],0)
tmp <- matrix(0,1,division-1)
for(t in 1:(division-1)){
for(i in 1:d.size){
assign(state[i],X.t0[t,i])
}
tmp[1,t] <- eval(rho)
}
H0 <- exp(-(sum(tmp) * delta))
return(as.double(H0) )
}
##third expansion
p2_z <- function(z){
if(k.size == 1){
zlen <- length(z)
result <- c()
for(i in 1:zlen){
result[i] <- p2(z[i],get_F_tilde1__2,get_F_tilde2,
get_F_tilde1H1,get_H2_1,get_H2_2,get_H2_3,env)
}
}else{
result <- p2(z,get_F_tilde1__2,get_F_tilde2,
get_F_tilde1H1,get_H2_1,get_H2_2,get_H2_3,env)
}
return(result)
}
d2.term <- function(){
gz_p2 <- function(z){
result <- H0 * G(z) * p2_z(z)
return(result)
}
if(k.size == 1){
ztmp <- seq(mu-7*sqrt(Sigma),mu+7*sqrt(Sigma),length=1000)
dt <- ztmp[2] - ztmp[1]
my.diff <- diff(ztmp)
my.diff[1] <- my.diff[1]/2
my.diff <- c(my.diff,my.diff[1])
p2tmp <- gz_p2(ztmp)
result <- p2tmp %*% my.diff
}else if(2 <= k.size || k.size <= 20){
lambda <- eigen(Sigma)$values
matA <- eigen(Sigma)$vector
gz_p2 <- function(z){
tmpz <- matA %*% z
tmp <- H0 * G(tmpz) * p2_z(tmpz) #det(matA) = 1
return( tmp )
}
my.x <- matrix(0,k.size,20^k.size)
dt <- 1
for(k in 1:k.size){
max <- 7 * sqrt(lambda[k])
min <- -7 * sqrt(lambda[k])
tmp.x <- seq(min,max,length=20)
dt <- dt * (tmp.x[2] - tmp.x[1])
my.x[k,] <- rep(tmp.x,each=20^(k.size-k),times=20^(k-1))
}
result <- 0
for(i in 1:20^k.size){
result <- result + gz_p2(my.x[,i])
}
result <- result * dt
}else{
stop("length k is too long.")
}
return(result)
}
#################################################
# Here is an entry point of 'asymptotic_term()' #
#################################################
## initialization part
division <- nrow(X.t0)
delta <- Terminal/(division - 1)
# make expressions of derivation of V0
dx.drift <- Derivation.vector(V0,state,d.size,d.size)
de.drift <- Derivation.scalar(V0,pars,d.size)
dede.drift <- Derivation.scalar(de.drift,pars,d.size)
# make expressions of derivation of V
dx.diffusion <- as.list(NULL)
for(i in 1:d.size){
dx.diffusion[i] <- list(Derivation.vector(V[[i]],state,d.size,r.size))
}
de.diffusion <- as.list(NULL)
for(i in 1:d.size){
de.diffusion[i] <- list(Derivation.scalar(V[[i]],pars,r.size))
}
dede.diffusion <- as.list(NULL)
for(i in 1:d.size){
dede.diffusion[i] <- list(Derivation.scalar(de.diffusion[[i]],pars,r.size))
}
dxdx.drift <- list()
dxdx.diffusion <- list()
for(i1 in 1:d.size){
dxdx.drift[[i1]] <- list()
dxdx.diffusion[[i1]] <- list()
for(i2 in 1:d.size){
dxdx.drift[[i1]][[i2]] <- list()
dxdx.diffusion[[i1]][[i2]] <- list()
for(i in 1:d.size){
tmp1 <- parse(text=deparse(D(V0[i],state[i2])))
dxdx.drift[[i1]][[i2]][i] <- parse(text=deparse(D(tmp1,state[i1])))
dxdx.diffusion[[i1]][[i2]][[i]] <- list()
for(r in 1:r.size){
tmp2 <- parse(text=deparse(D(V[[i]][r],state[i2])))
dxdx.diffusion[[i1]][[i2]][[i]][r] <- parse(text=deparse(D(tmp2,state[i1])))
}
}
}
}
dxde.drift <- list()
dxde.diffusion <- list()
for(i1 in 1:d.size){
dxde.drift[[i1]] <- list()
dxde.diffusion[[i1]] <- list()
for(i in 1:d.size){
tmp1 <- parse(text=deparse(D(V0[i],pars[1])))
dxde.drift[[i1]][i] <- parse(text=deparse(D(tmp1,state[i1])))
dxde.diffusion[[i1]][[i]] <- list()
for(r in 1:r.size){
tmp2 <- parse(text=deparse(D(V[[i]][r],pars[1])))
dxde.diffusion[[i1]][[i]][r] <- parse(text=deparse(D(tmp2,state[i1])))
}
}
}
env <- new.env()
env$d.size <- d.size
env$r.size <- r.size
env$k.size <- k.size
env$division <- division
env$delta <- delta
env$state <- state
env$pars <- pars
env$block <- division
env$my.range <- c(1:division)
yuima.warn("Get variables ...")
Y <- Get.Y(env=env)
tmpY <- array(0,dim=c(d.size,d.size,division))
invY <- array(0,dim=c(d.size,d.size,division))
for(t in 1:division){
tmpY[,,t] <- matrix(Y[t,],d.size,d.size)
invY[,,t] <- solve(tmpY[,,t])
}
env$invY <- invY
get_e_f0 <- e_f0(X.t0,f,env)
get_e_f <- e_f(X.t0,f,env)
get_x_f0 <- x_f0(X.t0,f,env)
get_e_F <- e_F(X.t0,F,env)
get_x_F <- x_F(X.t0,F,env)
get_Y_e_V0 <- Y_e_V0(X.t0,de.drift,env)
get_Y_e_V <- Y_e_V(X.t0,de.diffusion,env)
mu <- funcmu(env=env)
aMat <- funca(env=env) ## 2010/11/24, TBC
Sigma <- funcsigma(env=env)
invSigma <- solve(Sigma)
di.rho <- get.di.rho()
de.rho <- get.de.rho()
H0 <- get.H0()
yuima.warn("Done.")
## calculation
yuima.warn("Calculating d0 ...")
d0 <- get.d0.term()
yuima.warn("Done\n")
yuima.warn("Calculating d1 term ...")
# prepare for trapezium integration
my.range <- make.range.for.trapezium.fomula(division,block)
my.diff <- my.range[2:(block+1)] - my.range[1:block]
Diff <- matrix(0,block+1,block+1)
for(t in 2:length(my.range)){
for(s in 1:t){
if( s==1 || t==s ){
if(s==1){
Diff[t,s] <- my.diff[s]
}else if(t==s){
Diff[t,s] <- my.diff[s-1]
}
}else{
Diff[t,s] <- my.diff[s-1] + my.diff[s]
}
}
}
Diff <- Diff / 2 # trapezium integrations need "/2"
env$aMat <- aMat
env$mu <- mu
env$Sigma <- Sigma
env$invSigma <- invSigma
env$invY <- array(invY[,,my.range],dim=c(d.size,d.size,block+1))
env$block <- block + 1
env$my.range <- my.range
env$Diff <- Diff
tmpY <- array(tmpY[,,my.range],dim=c(d.size,d.size,block+1))
get_Y_e_V0 <- Y_e_V0(X.t0,de.drift,env)
get_Y_e_V <- Y_e_V(X.t0,de.diffusion,env)
get_Y_D <- Y_D(X.t0,tmpY,get_Y_e_V0,env)
get_Y_x1_x2_V0 <- Y_x1_x2_V0(X.t0,dxdx.drift,env)
get_Y_x1_x2_V <- Y_x1_x2_V(X.t0,dxdx.diffusion,env)
get_Y_x_e_V0 <- Y_x_e_V0(X.t0,dxde.drift,env)
get_Y_x_e_V <- Y_x_e_V (X.t0,dxde.diffusion,env)
get_Y_e_e_V0 <- Y_e_e_V0(X.t0,dede.drift,env)
get_Y_e_e_V <- Y_e_e_V(X.t0,dede.diffusion,env)
get_D0_t <- D0_t(tmpY, get_Y_D, get_Y_e_V)
get_e_t <- e_t(tmpY, get_Y_e_V, get_Y_D, get_Y_x1_x2_V0, get_Y_x_e_V0, get_Y_e_e_V0, env)
get_U_t <- U_t(tmpY, get_Y_D, get_Y_x1_x2_V0, get_Y_x_e_V0, env)
get_U_hat_t <- U_hat_t(tmpY, get_Y_e_V, get_Y_D, get_Y_x1_x2_V0, get_Y_x_e_V, env)
get_E0_t <- E0_t(tmpY, get_Y_e_V, get_Y_x1_x2_V0, get_Y_e_e_V, get_e_t, get_U_t, get_U_hat_t, env)
get_e_f0 <- e_f0(X.t0,f,env)
get_e_f <- e_f(X.t0,f,env)
get_x_f0 <- x_f0(X.t0,f,env)
get_x1_x2_f0 <- x1_x2_f0(X.t0,f,env)
get_x1_x2_f <- x1_x2_f(X.t0,f,env)
get_x_e_f0 <- x_e_f0(X.t0,f,env)
get_x_e_f <- x_e_f(X.t0,f,env)
get_e_e_f0 <- e_e_f0(X.t0,f,env)
get_e_e_f <- e_e_f(X.t0,f,env)
get_F_t <- F_t (tmpY, get_Y_e_V, get_Y_D, get_x1_x2_f0, get_x_e_f0, get_e_e_f0, env)
get_W_t <- W_t (tmpY, get_Y_D, get_x1_x2_f0, get_x_e_f0, env)
get_W_hat_t <- W_hat_t (tmpY, get_Y_e_V, get_x1_x2_f0, get_x_e_f, env)
get_F_tilde1_1 <- F_tilde1_1(tmpY, get_Y_e_V, get_x1_x2_f0, get_e_e_f, get_F_t, get_W_t, get_W_hat_t, env)
get_F_tilde1_2 <- F_tilde1_2(get_E0_t,get_x_f0,env)
get_x_F <- x_F(X.t0,F,env)
get_x1_x2_F <- x1_x2_F(X.t0,F,env)
get_x_e_F <- x_e_F(X.t0,F,env)
get_e_e_F <- e_e_F(X.t0,F,env)
get_F_tilde1_3 <- F_tilde1_3(get_E0_t,get_x_F,env)
get_F_tilde1_4 <- F_tilde1_4(tmpY, get_Y_e_V, get_Y_D, get_x_F, get_x1_x2_F, get_x_e_F, get_e_e_F, env)
get_F_tilde1 <- F_tilde1(get_F_tilde1_1, get_F_tilde1_2, get_F_tilde1_3, get_F_tilde1_4)
get_F_tilde1__1 <- F_tilde1__1(get_F_tilde1,env)
d1 <- get.d1.term()
yuima.warn("Done\n")
##third
get_F_tilde1__2 <- F_tilde1__2(get_F_tilde1,env)
dxdxdx.drift <- list()
for(i1 in 1:d.size){
dxdxdx.drift[[i1]] <- list()
for(i2 in 1:d.size){
dxdxdx.drift[[i1]][[i2]] <- list()
for(i3 in 1:d.size){
tmp1 <- parse(text=deparse(D(V0[i],state[i2])))
dxdxdx.drift[[i1]][[i2]][[i3]] <- list()
for(i in 1:d.size){
tmp1 <- parse(text=deparse(D(V0[i],state[i3])))
tmp2 <- parse(text=deparse(D(tmp1,state[i2])))
dxdxdx.drift[[i1]][[i2]][[i3]][i] <- parse(text=deparse(D(tmp2,state[i1])))
}
}
}
}
dxdxde.drift <- list()
dxdxde.diffusion <- list()
for(i1 in 1:d.size){
dxdxde.drift[[i1]] <- list()
dxdxde.diffusion[[i1]] <- list()
for(i2 in 1:d.size){
dxdxde.drift[[i1]][[i2]] <- list()
dxdxde.diffusion[[i1]][[i2]] <- list()
for(i in 1:d.size){
tmp1 <- dxde.drift[[i2]][[i]]
dxdxde.drift[[i1]][[i2]][i] <- parse(text=deparse(D(tmp1,state[i1])))
dxdxde.diffusion[[i1]][[i2]][[i]] <- list()
for(r in 1:r.size){
tmp2 <- dxde.diffusion[[i2]][[i]][[r]]
dxdxde.diffusion[[i1]][[i2]][[i]][r] <- parse(text=deparse(D(tmp2,state[i1])))
}
}
}
}
dxdede.drift <- list()
dxdede.diffusion <- list()
for(i1 in 1:d.size){
dxdede.drift[[i1]] <- list()
dxdede.diffusion[[i1]] <- list()
for(i in 1:d.size){
tmp1 <- dxde.drift[[i1]][[i]]
dxdede.drift[[i1]][i] <- parse(text=deparse(D(tmp1,pars[1])))
dxdede.diffusion[[i1]][[i]] <- list()
for(r in 1:r.size){
tmp2 <- dxde.diffusion[[i1]][[i]][[r]]
dxdede.diffusion[[i1]][[i]][r] <- parse(text=deparse(D(tmp2,pars[1])))
}
}
}
dedede.drift <- list()
dedede.diffusion <- list()
for(i in 1:d.size){
tmp1 <- parse(text=deparse(D(V0[i],pars[1])))
tmp2 <- parse(text=deparse(D(tmp1,pars[1])))
dedede.drift[[i]] <- parse(text=deparse(D(tmp2,pars[1])))
dedede.diffusion[[i]] <- list()
for(r in 1:r.size){
tmp3 <- parse(text=deparse(D(V[[i]][r],pars[1])))
tmp4 <- parse(text=deparse(D(tmp3,pars[1])))
dedede.diffusion[[i]][r] <- parse(text=deparse(D(tmp4,pars[1])))
}
}
get_Y_x1_x2_x3_V0 <- Y_x1_x2_x3_V0(X.t0,dxdxdx.drift,env)
get_Y_x1_x2_e_V0 <- Y_x1_x2_e_V0(X.t0,dxdxde.drift,env)
get_Y_x1_x2_e_V <- Y_x1_x2_e_V (X.t0,dxdxde.diffusion,env)
get_Y_x_e_e_V0 <- Y_x_e_e_V0(X.t0,dxdede.drift,env)
get_Y_x_e_e_V <- Y_x_e_e_V (X.t0,dxdede.diffusion,env)
get_Y_e_e_e_V0 <- Y_e_e_e_V0(X.t0,dedede.drift,env)
get_Y_e_e_e_V <- Y_e_e_e_V(X.t0,dedede.diffusion,env)
get_x1_x2_x3_f0 <- x1_x2_x3_f0(X.t0,f,env)
get_x1_x2_x3_f <- x1_x2_x3_f(X.t0,f,env)
get_x1_x2_e_f0 <- x1_x2_e_f0(X.t0,f,env)
get_x1_x2_e_f <- x1_x2_e_f(X.t0,f,env)
get_x_e_e_f0 <- x_e_e_f0(X.t0,f,env)
get_x_e_e_f <- x_e_e_f(X.t0,f,env)
get_e_e_e_f0 <- e_e_e_f0(X.t0,f,env)
get_e_e_e_f <- e_e_e_f(X.t0,f,env)
get_x1_x2_x3_F <- x1_x2_x3_F(X.t0,F,env)
get_x1_x2_e_F <- x1_x2_e_F(X.t0,F,env)
get_x_e_e_F <- x_e_e_F(X.t0,F,env)
get_e_e_e_F <- e_e_e_F(X.t0,F,env)
get_C_hat1 <- C_hat1(tmpY, get_Y_e_V, get_Y_D, get_Y_x1_x2_V0, get_Y_e_e_V, get_e_t, get_U_t, get_U_hat_t, env)
get_C_hat2 <- C_hat2(tmpY, get_Y_e_V, get_Y_x1_x2_V0, get_Y_x_e_V0, get_Y_e_e_V, get_e_t, get_U_t, get_U_hat_t, env)
get_C_hat3 <- C_hat3(tmpY, get_Y_e_V, get_Y_D, get_Y_x1_x2_x3_V0, env)
get_C_hat4 <- C_hat4(tmpY, get_Y_e_V, get_Y_D, get_Y_x1_x2_e_V0, env)
get_C_hat5 <- C_hat5(tmpY, get_Y_e_V, get_Y_D, get_Y_x_e_e_V0, env)
get_C_hat6 <- C_hat6(tmpY, get_Y_e_e_e_V0, env)
get_C_hat7 <- C_hat7(tmpY, get_Y_e_V, get_Y_x1_x2_V0, get_Y_x_e_V, get_Y_e_e_V, get_e_t, get_U_t, get_U_hat_t, env)
get_C_hat8 <- C_hat8(tmpY, get_Y_e_V, get_Y_D, get_Y_x1_x2_e_V, env)
get_C_hat9 <- C_hat9(tmpY, get_Y_e_V, get_Y_D, get_Y_x_e_e_V, env)
get_C_hat10 <- C_hat10(tmpY, get_Y_e_e_e_V, env)
get_C0_t <- C0_t(get_C_hat1, get_C_hat2, get_C_hat3, get_C_hat4, get_C_hat5, get_C_hat6, get_C_hat7, get_C_hat8, get_C_hat9, get_C_hat10)
get_F_tilde2_1_1 <- F_tilde2_1_1(get_x_f0,get_C0_t,env)
get_F_tilde2_1_2 <- F_tilde2_1_2(get_x_F,get_C0_t,env)
get_D_E <- D_E(tmpY, get_Y_e_V, get_Y_D, get_Y_x1_x2_V0, get_Y_e_e_V, get_e_t, get_U_t, get_U_hat_t, env)
get_F_tilde2_2_1 <- F_tilde2_2_1(get_x1_x2_f0,get_D_E,env)
get_F_tilde2_2_2 <- F_tilde2_2_2(get_x1_x2_F,get_D_E,env)
get_F_tilde2_3_1 <- F_tilde2_3_1(tmpY, get_Y_e_V, get_Y_x1_x2_V0, get_Y_e_e_V, get_U_t, get_U_hat_t, get_e_t, get_x_e_f0, env)
get_E0_bar <- E0_bar(get_E0_t,env)
get_F_tilde2_3_2 <- F_tilde2_3_2(get_E0_bar, get_x_e_F, env)
get_D_a <- D_a(tmpY, get_Y_e_V, get_Y_D, env)
get_D_b <- D_b(tmpY, get_Y_e_V, get_Y_D, env)
get_D_c <- D_c(tmpY, get_Y_e_V, get_Y_D, env)
get_F_tilde2_4_1 <- F_tilde2_4_1(get_x1_x2_x3_f0, get_x1_x2_e_f0, get_x_e_e_f0, get_e_e_e_f0, get_D_a, get_D_b, get_D_c, env)
get_F_tilde2_4_2 <- F_tilde2_4_2(get_x1_x2_x3_F, get_x1_x2_e_F, get_x_e_e_F, get_e_e_e_F, get_D_a, get_D_b, get_D_c, env)
get_F_tilde2_5 <- F_tilde2_5(tmpY, get_Y_e_V, get_Y_x1_x2_V0, get_Y_e_e_V, get_e_t, get_U_t, get_U_hat_t, get_x_e_f, env)
get_F_tilde2_6 <- F_tilde2_6(tmpY, get_Y_e_V, get_Y_D, get_x1_x2_e_f, env)
get_F_tilde2_7 <- F_tilde2_7(tmpY, get_Y_e_V, get_Y_D, get_x_e_e_f, env)
get_F_tilde2_8 <- F_tilde2_8(get_e_e_e_f,env)
get_F_tilde2 <- F_tilde2(get_F_tilde2_1_1, get_F_tilde2_1_2, get_F_tilde2_2_1, get_F_tilde2_2_2,
get_F_tilde2_3_1, get_F_tilde2_3_2, get_F_tilde2_4_1, get_F_tilde2_4_2,
get_F_tilde2_5, get_F_tilde2_6, get_F_tilde2_7, get_F_tilde2_8)
#added
get_x_rho <- x_rho(X.t0,rho,env)
get_e_rho <- e_rho(X.t0,rho,env)
get_x1_x2_rho <- x1_x2_rho(X.t0,rho,env)
get_x_e_rho <- x_e_rho(X.t0,rho,env)
get_e_e_rho <- e_e_rho(X.t0,rho,env)
##modified
n1 <- length(get_x_rho)
n2 <- sum(get_x_rho == 0)
n3 <- length(get_e_rho)
n4 <- sum(get_e_rho == 0)
n5 <- length(get_x1_x2_rho)
n6 <- sum(get_x1_x2_rho == 0)
n7 <- length(get_x_e_rho)
n8 <- sum(get_x_e_rho == 0)
n9 <- length(get_e_e_rho)
n10 <- sum(get_e_e_rho == 0)
n <- (n1 - n2 != 0) + (n3 - n4 != 0) + (n5 - n6 != 0) +
(n7 - n8 != 0) + (n9 - n10 != 0)
if(n != 0){
get_scH_0_1 <- scH_0_1(get_Y_D,get_e_rho,get_x_rho,env)
get_scH_1_1 <- scH_1_1(tmpY,get_Y_e_V,get_x_rho,env)
get_scH_1_2 <- scH_1_2(get_scH_1_1,env)
get_F_tilde1H1 <- F_tilde1H1(get_F_tilde1,get_scH_0_1,get_scH_1_1,get_scH_1_2,env)
get_H2_1 <- H2_1(get_scH_0_1,get_scH_1_1,get_scH_1_2,env)
get_H2_2 <- H2_2(get_D_b,get_D_c,get_x1_x2_rho,get_x_e_rho,get_e_e_rho)
get_H2_3 <- H2_3(get_E0_bar,get_x_rho)
}else{
p2 <- function(z,get_F_tilde1__2,get_F_tilde2,env){
k.size <- env$k.size
delta <- env$delta
mu <- env$mu
Sigma <- env$Sigma
z.tilde <- z - mu
first <- 0
second <- 0
if(k.size == 1){
first <- (F_tilde1__2_x(1,1,z.tilde+2*delta,get_F_tilde1__2,env) *
dnorm(z+2*delta,mean=mu,sd=sqrt(Sigma)) -
2 * F_tilde1__2_x(1,1,z.tilde+delta,get_F_tilde1__2,env) *
dnorm(z+delta,mean=mu,sd=sqrt(Sigma)) +
F_tilde1__2_x(1,1,z.tilde,get_F_tilde1__2,env) *
dnorm(z,mean=mu,sd=sqrt(Sigma)))/(delta)^2
first <- first/2
second <- (F_tilde2_x(1,z.tilde+delta,get_F_tilde2,env) *
dnorm(z+delta,mean=mu,sd=sqrt(Sigma)) -
F_tilde2_x(1,z.tilde,get_F_tilde2,env) *
dnorm(z,mean=mu,sd=sqrt(Sigma)))/delta
}else{
tmp1 <- matrix(0,k.size,k.size)
for(l1 in 1:k.size){
for(l2 in 1:k.size){
dif1 <- numeric(k.size)
dif2 <- numeric(k.size)
dif1[l1] <- dif1[l1] + delta
dif2[l2] <- dif2[l2] + delta
tmp1[l1,l2] <- (F_tilde1__2_x(l1,l2,z.tilde+dif1+dif2,get_F_tilde1__2,env) *
ft_norm(z+dif1+dif2,env) -
F_tilde1__2_x(l1,l2,z.tilde+dif1,get_F_tilde1__2,env) *
ft_norm(z+dif1,env) -
F_tilde1__2_x(l1,l2,z.tilde+dif2,get_F_tilde1__2,env) *
ft_norm(z+dif2,env) +
F_tilde1__2_x(l1,l2,z.tilde,get_F_tilde1__2,env) *
ft_norm(z,env))/(delta)^2
}
}
first <- sum(tmp1)/2
tmp2 <- double(k.size)
for(l in 1:k.size){
dif <- numeric(k.size)
dif[l] <- dif[l] + delta
tmp2[l] <- (F_tilde2_x(l,z.tilde+dif,get_F_tilde2,env) *
ft_norm(z+dif,env) -
F_tilde2_x(l,z.tilde,get_F_tilde2,env) *
ft_norm(z,env))/delta
}
second <- sum(tmp2)
}
result <- first - second
return(result)
}
p2_z <- function(z){
if(k.size == 1){
zlen <- length(z)
result <- c()
for(i in 1:zlen){
result[i] <- p2(z[i],get_F_tilde1__2,get_F_tilde2,env)
}
}else{
result <- p2(z,get_F_tilde1__2,get_F_tilde2,env)
}
return(result)
}
}
d2 <- d2.term()
terms <- list(d0=d0, d1=d1, d2=d2)
return(terms)
})
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