API for AtlasRDF
Gene Expression Atlas query and gene set enrichment package.
| Global functions | |
|---|---|
| AtlasRDF | Man page |
| AtlasRDF-package | Man page |
| calculateCountsForGeneLists | Man page Source code |
| class:enrichmentresult | Man page |
| class:factorbackground | Man page |
| class:generef | Man page |
| class:pathwayresult | Man page |
| doFishersEnrichment | Man page Source code |
| doFishersEnrichmentForEnsemblIds | Man page Source code |
| doFishersEnrichmentForGeneNames | Man page Source code |
| drawHeatMapForAtlasExperiment | Man page Source code |
| enrichmentresult | Man page |
| enrichmentresult-class | Man page |
| excludeSubclasses | Man page Source code |
| factorbackground | Man page |
| factorbackground-class | Man page |
| generef | Man page |
| generef-class | Man page |
| getAllEnsemblGenesForExFactor | Man page Source code |
| getConditionsForGeneName | Source code |
| getExFactorURIFromLabel | Man page Source code |
| getExperimentIdsForGeneURI | Man page Source code |
| getExperimentURIsForGeneId | Man page Source code |
| getExperimentsByDescription | Man page Source code |
| getGeneListFromPubmedid | Man page Source code |
| getGeneUriFromEnsemblId | Man page Source code |
| getGeneUriFromName | Man page Source code |
| getGenesForExperimentID | Man page Source code |
| getGenesForExperimentURI | Man page Source code |
| getGenesForPathwayURI | Man page Source code |
| getLabel | Man page Source code |
| getOntologyMappings | Man page Source code |
| getPathwayForGeneId | Man page Source code |
| getPathwayUriFromName | Man page Source code |
| getPathwaysFromGenesAndCondition | Man page Source code |
| getRankedPathwaysForGeneIds | Man page Source code |
| getSpeciesSpecificEnsemblGenesForExFactor | Man page Source code |
| getTaxonURI | Man page Source code |
| includeOnlySubclasses | Man page Source code |
| orderEnrichmentResults | Man page Source code |
| pathwayresult | Man page |
| pathwayresult-class | Man page |
| searchForEFOTerms | Man page Source code Source code |
| transcription_pathway_enrichment | Man page |
| vizPvalues | Man page Source code |
