Add a gene expression table in the
GeneExpSE experiment slot of an
CAGEset objects are not supported.
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The input object with the following modifications:
geneExpMatrix experiment containing gene expression levels as
SummarizedExperiment object with one assay called
matrix of integers. (This plays better than
when interfacing with downstream packages like DESeq2, and since the number of
genes is limited, a
matrix will not cause problems of performance.)
genes column data added, indicating total number of gene symbols
detected per library.
unannotated column data added, indicating for each sample the
number of counts that did not overlap with a known gene.
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