bam2CTSS: bam2CTSS
In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Description
Usage
Arguments
Details
Value
See Also
View source: R/ImportMethods.R
Description
Converts from BAM to CTSS
Usage
1
bam2CTSS(gr, removeFirstG, correctSystematicG, genome)
Arguments
gr
A GRanges object returned by import.bam.
removeFirstG
See getCTSS().
correctSystematicG
See getCTSS().
genome
See coerceInBSgenome().
Details
Converts genomic ranges representing SAM/BAM alignments into a CTSS object.
Value
Returns a CTSS object.
See Also
Other loadFileIntoGPos: import.CTSS,
import.bam.ctss, import.bam,
import.bedCTSS,
import.bedScore,
import.bedmolecule,
loadFileIntoGPos,
moleculesGR2CTSS
CAGEr documentation built on Jan. 17, 2021, 2 a.m.
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Description Usage Arguments Details Value See Also
View source: R/ImportMethods.R
Description
Converts from BAM to CTSS
Usage
1 | bam2CTSS(gr, removeFirstG, correctSystematicG, genome)
|
Arguments
gr |
A |
removeFirstG |
See getCTSS(). |
correctSystematicG |
See getCTSS(). |
genome |
See coerceInBSgenome(). |
Details
Converts genomic ranges representing SAM/BAM alignments into a CTSS object.
Value
Returns a CTSS object.
See Also
Other loadFileIntoGPos: import.CTSS,
import.bam.ctss, import.bam,
import.bedCTSS,
import.bedScore,
import.bedmolecule,
loadFileIntoGPos,
moleculesGR2CTSS
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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