import.bedCTSS: import.bedCTSS

In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Description

Imports a BED file where each line represents a single base, with a score counting the number of CAGE transcription start sites (CTSS).

Usage

import.bedCTSS(filepath)

Arguments

filepath

The path to the BED file.

Value

A GRanges object where each line represents one nucleotide.

See Also

Other loadFileIntoGPos: bam2CTSS, import.CTSS, import.bam.ctss, import.bam, import.bedScore, import.bedmolecule, loadFileIntoGPos, moleculesGR2CTSS

Examples

# TODO: add exmaple file
# import.BED(system.file("extdata", "example.bed", package = "CAGEr"))

CAGEr documentation built on Jan. 17, 2021, 2 a.m.