consensusClusters-set: Set consensus clusters from CAGEr objects

In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Description

Set the information on consensus clusters in a CAGEr object.

Usage

consensusClusters(object) <- value

## S4 replacement method for signature 'CAGEset'
consensusClusters(object) <- value

## S4 replacement method for signature 'CAGEexp'
consensusClusters(object) <- value

consensusClustersSE(object) <- value

## S4 replacement method for signature 'CAGEset,ANY'
consensusClustersSE(object) <- value


  ## S4 replacement method for signature 'CAGEexp,RangedSummarizedExperiment'
consensusClustersSE(object) <- value

consensusClustersGR(object) <- value

## S4 replacement method for signature 'CAGEset'
consensusClustersGR(object) <- value

## S4 replacement method for signature 'CAGEexp'
consensusClustersGR(object) <- value

Arguments

object	A CAGEr object.
value	A data.frame of consensus clusters

Details

These setter methods are mostly for internal use, but are exported in case they may be useful to advanced users.

Author(s)

Vanja Haberle

Charles Plessy

CAGEr documentation built on Jan. 17, 2021, 2 a.m.