consensusClusterConvertors: Private functions to convert CC formats
In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Description
Usage
Arguments
See Also
Examples
Description
Interconvert consensus clusters (CC) formats used in classes CAGEset
(data.frame) and CAGEexp (GRanges).
Usage
1
2
3
Arguments
gr
Consensus clusters in GRanges format.
df
Consensus clusters in data.frame format.
See Also
Other df2granges converters: tagClusterConvertors
Examples
1
2
3
4
5
6
df <- consensusClusters(exampleCAGEset)
head(df)
gr <- CCdataframe2granges(df)
gr
# No round-trip because start and end were not integer in df.
# identical(df, CCgranges2dataframe(gr))
CAGEr documentation built on Jan. 17, 2021, 2 a.m.
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Description Usage Arguments See Also Examples
Description
Interconvert consensus clusters (CC) formats used in classes CAGEset
(data.frame) and CAGEexp (GRanges).
Usage
1 2 3 |
Arguments
gr |
Consensus clusters in |
df |
Consensus clusters in |
See Also
Other df2granges converters: tagClusterConvertors
Examples
1 2 3 4 5 6 | df <- consensusClusters(exampleCAGEset)
head(df)
gr <- CCdataframe2granges(df)
gr
# No round-trip because start and end were not integer in df.
# identical(df, CCgranges2dataframe(gr))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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