coerceInBSgenome: coerceInBSgenome
In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Description
Usage
Arguments
Value
View source: R/ImportMethods.R
Description
A private (non-exported) function to discard any range that is
not compatible with the CAGEr object's BSgenome.
Usage
1
coerceInBSgenome(gr, genome)
Arguments
gr
The genomic ranges to coerce.
genome
The name of a BSgenome package, which must me installed,
or NULL to skip coercion.
Value
A GRanges object in which every range is guaranteed to be compatible
with the given BSgenome object. The sequnames of the GRanges are also set
accordingly to the BSgenome.
CAGEr documentation built on Jan. 17, 2021, 2 a.m.
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Description Usage Arguments Value
View source: R/ImportMethods.R
Description
A private (non-exported) function to discard any range that is not compatible with the CAGEr object's BSgenome.
Usage
1 | coerceInBSgenome(gr, genome)
|
Arguments
gr |
The genomic ranges to coerce. |
genome |
The name of a BSgenome package, which must me installed,
or |
Value
A GRanges object in which every range is guaranteed to be compatible with the given BSgenome object. The sequnames of the GRanges are also set accordingly to the BSgenome.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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