CTSScumulativesTagClusters: Get/set CTSS cumulative TC or CC data

In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Description

Accessor function.

Usage

CTSScumulativesTagClusters(object, samples = NULL)

## S4 method for signature 'CAGEset'
CTSScumulativesTagClusters(object, samples = NULL)

## S4 method for signature 'CAGEexp'
CTSScumulativesTagClusters(object, samples = NULL)

CTSScumulativesCC(object, samples = NULL)

## S4 method for signature 'CAGEset'
CTSScumulativesCC(object, samples = NULL)

## S4 method for signature 'CAGEexp'
CTSScumulativesCC(object, samples = NULL)

CTSScumulativesTagClusters(object) <- value

## S4 replacement method for signature 'CAGEset'
CTSScumulativesTagClusters(object) <- value

## S4 replacement method for signature 'CAGEexp'
CTSScumulativesTagClusters(object) <- value

Arguments

object	A CAGEset or CAGEset object.
samples	One or more valid sample names.
value	CTSScumulativesTagClusters data

Value

List of numeric Rle.

See Also

Other CAGEr clusters functions: CTSSclusteringMethod, CustomConsensusClusters, aggregateTagClusters, clusterCTSS, consensusClustersDESeq2, consensusClustersGR, cumulativeCTSSdistribution, plotInterquantileWidth, quantilePositions, tagClusters

Other CAGEr accessor methods: CTSSclusteringMethod, CTSScoordinates, CTSSnormalizedTpm, CTSStagCountTable, CTSStagCount, GeneExpDESeq2, GeneExpSE, consensusClustersGR, genomeName, inputFilesType, inputFiles, librarySizes, sampleLabels, seqNameTotalsSE, tagClusters

CAGEr documentation built on Jan. 17, 2021, 2 a.m.