CTSStagCount: Extracting CAGE tag count for TSSs from CAGEset object

Description Usage Arguments Value Author(s) See Also Examples

Description

Extracts the tag count for all detected TSSs in all CAGE datasets from a CAGEset object.

Usage

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CTSStagCount(object)

Arguments

object

A CAGEset object

Value

Returns a data.frame with number of CAGE tags supporting each TSS (rows) in every CAGE dataset (columns).

Author(s)

Vanja Haberle

See Also

CTSScoordinates
CTSSnormalizedTpm

Examples

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load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))

tagCount <- CTSStagCount(exampleCAGEset)
head(tagCount)


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