Extracting CAGE tag count for TSSs from CAGEset object

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Description

Extracts the tag count for all detected TSSs in all CAGE datasets from a CAGEset object.

Usage

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CTSStagCount(object)

Arguments

object

A CAGEset object

Value

Returns a data.frame with number of CAGE tags supporting each TSS (rows) in every CAGE dataset (columns).

Author(s)

Vanja Haberle

See Also

CTSScoordinates
CTSSnormalizedTpm

Examples

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load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))

tagCount <- CTSStagCount(exampleCAGEset)
head(tagCount)

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