expressionClasses: Extracting labels of expression classes

Description Usage Arguments Value Author(s) See Also Examples

Description

Retrieves labels of expression classes of either individual CTSSs or consensus clusters from a CAGEset object.

Usage

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expressionClasses(object, what)

Arguments

object

A CAGEset object

what

Which level of expression clustering should be used. Can be either "CTSS" to extract labels of expression classes of individual CTSSs or "consensusClusters" to extract labels of expression classes of consensus clusters.

Value

Returns character vector of labels of expression classes. The number of labels matches the number of expression clusters returned by getExpressionProfiles function.

Author(s)

Vanja Haberle

See Also

getExpressionProfiles
plotExpressionProfiles
extractExpressionClass

Examples

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load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))

exprClasses <- expressionClasses(exampleCAGEset, what = "CTSS")
exprClasses


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