expressionClasses: Extract labels of expression classes

Description Usage Arguments Value See Also Examples

Description

Retrieves labels of expression classes of either individual CTSSs or consensus clusters from a CAGEset object.

Usage

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expressionClasses(object, what = c("CTSS", "consensusClusters"))

## S4 method for signature 'CAGEset'
expressionClasses(object, what = c("CTSS",
  "consensusClusters"))

## S4 method for signature 'CAGEexp'
expressionClasses(object, what = c("CTSS",
  "consensusClusters"))

Arguments

object

A CAGEset object.

what

Which level of expression clustering should be used. Can be either "CTSS" to extract labels of expression classes of individual CTSSs or "consensusClusters" to extract labels of expression classes of consensus clusters.

Value

Returns character vector of labels of expression classes. The number of labels matches the number of expression clusters returned by getExpressionProfiles function.

See Also

getExpressionProfiles plotExpressionProfiles extractExpressionClass

Examples

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exprClasses <- expressionClasses(exampleCAGEset, what = "CTSS")
exprClasses

CAGEr documentation built on May 2, 2018, 2:59 a.m.