consensusClustersQuantile: Quantile metadata stored in CAGEr objects.

In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Description

Accessors for consensus cluster quantile data in CAGEr objects.

Usage

consensusClustersQuantileLow(object, samples = NULL)

## S4 method for signature 'CAGEset'
consensusClustersQuantileLow(object, samples = NULL)

## S4 method for signature 'CAGEexp'
consensusClustersQuantileLow(object, samples = NULL)

consensusClustersQuantileUp(object, samples = NULL)

## S4 method for signature 'CAGEset'
consensusClustersQuantileUp(object, samples = NULL)

## S4 method for signature 'CAGEexp'
consensusClustersQuantileUp(object, samples = NULL)

consensusClustersQuantile(object, sample = NULL, q)

## S4 method for signature 'CAGEset'
consensusClustersQuantile(object, sample = NULL, q)

## S4 method for signature 'CAGEexp'
consensusClustersQuantile(object, sample = NULL, q)

consensusClustersQuantileLow(object, samples = NULL) <- value

## S4 replacement method for signature 'CAGEset'
consensusClustersQuantileLow(object,
  samples = NULL) <- value

consensusClustersQuantileUp(object, samples = NULL) <- value

## S4 replacement method for signature 'CAGEset'
consensusClustersQuantileUp(object,
  samples = NULL) <- value

Arguments

object	A CAGEr object.
samples	Sample name(s), number(s) or NULL (default) for all samples.
sample	A single sample name or number, or NULL (default) for all samples.
q	A quantile.
value	A list (one entry per sample) of data frames with multiple columns: cluster for the cluster ID, and then q_0.n where 0.n indicates a quantile.

CAGEr documentation built on Jan. 17, 2021, 2 a.m.