This is a
data.frame object that contains information about all mouse primary cell, cell line and tissue CAGE datasets (395) produced by FANTOM5 constortium, which are available for import with
CAGEr. The list containes all samples published in the main FANTOM5 publication (Forrest et al. Nature 2014) as presented in the Supplementary Table 1. The columns provide the following information:
sample: name/label of individual sample, which can be used as
sample argument in the
importPublicData function to retrieve specified sample.
type: type of the sample, either
"primary cell" or
description: description of individual sample as provided by the FANTOM5 consortium.
library_id: unique ID of the CAGE library as provided by the FANTOM5 consortium.
data_url: URL to gzip-ed TSS file at online FANTOM5 data resource, which is used by
importPublicData to fetch given sample.