Extracts consensus clusters with shifting score and/or FDR (adjusted P-value from
Kolmogorov-Smirnov test) above specified threshold. Returns their genomic coordinates,
total CAGE signal and the position of dominant TSS in the two compared groups of CAGE
samples, along with the value of the shifting score, P-value and FDR. Scores and
P-values/FDR have to be calculated beforehand by calling
1 2 3 4 5 6
Consensus clusters with total CAGE signal
Consensus clusters with shifting score
Consensus clusters with adjusted P-value (FDR) from
data.frame of shifting promoters with genomic coordinates and
positions of dominant TSS and CAGE signal in the two compared (groups of) samples, along
with shifting score and adjusted P-value (FDR).
Other CAGEr promoter shift functions:
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