inputFiles: Extracting paths to input files from CAGEr objects

In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Description

Extracts the paths to CAGE data input files from CAGEset and CAGEexp objects.

Usage

inputFiles(object)

## S4 method for signature 'CAGEset'
inputFiles(object)

## S4 method for signature 'CAGEexp'
inputFiles(object)

inputFiles(object) <- value

## S4 replacement method for signature 'CAGEset'
inputFiles(object) <- value

## S4 replacement method for signature 'CAGEexp'
inputFiles(object) <- value

Arguments

object	A CAGEset or CAGEexp object.
value	A character vector with one file path per sample.

Value

Returns a character vector of paths to CAGE data input files.

Author(s)

Vanja Haberle

Charles Plessy

See Also

Other CAGEr accessor methods: CTSSclusteringMethod, CTSScoordinates, CTSScumulativesTagClusters, CTSSnormalizedTpm, CTSStagCountTable, CTSStagCount, GeneExpDESeq2, GeneExpSE, consensusClustersGR, genomeName, inputFilesType, librarySizes, sampleLabels, seqNameTotalsSE, tagClusters

Other CAGEr setter methods: genomeName, inputFilesType, sampleLabels, setColors

Examples

inputFiles(exampleCAGEset)

CAGEr documentation built on Jan. 17, 2021, 2 a.m.