seqNameTotalsSE: Retreives the SummarizedExperiment containing chromosome...
In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Description
Usage
Arguments
Author(s)
See Also
Examples
Description
Get or set a SummarizedExperiment summarising whole-chromosome
expression levels in the experiment slot seqNameTotals and the sample metadata
of the CAGEexp object.
Usage
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seqNameTotalsSE(object)
## S4 method for signature 'CAGEset'
seqNameTotalsSE(object)
## S4 method for signature 'CAGEexp'
seqNameTotalsSE(object)
seqNameTotalsSE(object) <- value
Arguments
object
A CAGEexp object.
value
A SummarizedExperiment object where rows represent reference sequences
such as chromosomes.
Author(s)
Charles Plessy
See Also
summariseChrExpr
Other CAGEr accessor methods: CTSSclusteringMethod,
CTSScoordinates,
CTSScumulativesTagClusters,
CTSSnormalizedTpm,
CTSStagCountTable,
CTSStagCount, GeneExpDESeq2,
GeneExpSE,
consensusClustersGR,
genomeName, inputFilesType,
inputFiles, librarySizes,
sampleLabels, tagClusters
Examples
1
CAGEr documentation built on Jan. 17, 2021, 2 a.m.
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Description Usage Arguments Author(s) See Also Examples
Description
Get or set a SummarizedExperiment summarising whole-chromosome
expression levels in the experiment slot seqNameTotals and the sample metadata
of the CAGEexp object.
Usage
1 2 3 4 5 6 7 8 9 | seqNameTotalsSE(object)
## S4 method for signature 'CAGEset'
seqNameTotalsSE(object)
## S4 method for signature 'CAGEexp'
seqNameTotalsSE(object)
seqNameTotalsSE(object) <- value
|
Arguments
object |
A |
value |
A SummarizedExperiment object where rows represent reference sequences such as chromosomes. |
Author(s)
Charles Plessy
See Also
summariseChrExpr
Other CAGEr accessor methods: CTSSclusteringMethod,
CTSScoordinates,
CTSScumulativesTagClusters,
CTSSnormalizedTpm,
CTSStagCountTable,
CTSStagCount, GeneExpDESeq2,
GeneExpSE,
consensusClustersGR,
genomeName, inputFilesType,
inputFiles, librarySizes,
sampleLabels, tagClusters
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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