import.bedmolecule: import.bedmolecule

In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Description

Imports a BED file where each line counts for one molecule in a GRanges object where each line represents one nucleotide.

Usage

import.bedmolecule(filepath)

Arguments

filepath

The path to the BED file.

Value

Returns a CTSS object.

See Also

Other loadFileIntoGPos: bam2CTSS, import.CTSS, import.bam.ctss, import.bam, import.bedCTSS, import.bedScore, loadFileIntoGPos, moleculesGR2CTSS

Examples

# TODO: add exmaple file
# import.BED(system.file("extdata", "example.bed", package = "CAGEr"))

CAGEr documentation built on Jan. 17, 2021, 2 a.m.