moleculesGR2CTSS: moleculesGR2CTSS

In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Description

Calculates CTSS positions from a GenomicRanges object where each element represents a single molecule.

Usage

moleculesGR2CTSS(gr)

Arguments

gr	A GRanges object.

Value

Returns a GRanges object.

See Also

Other loadFileIntoGPos: bam2CTSS, import.CTSS, import.bam.ctss, import.bam, import.bedCTSS, import.bedScore, import.bedmolecule, loadFileIntoGPos

Examples

gr <- GenomicRanges::GRanges("chr1", IRanges::IRanges(1, 10), c("+", "-", "+"))
CAGEr:::moleculesGR2CTSS(gr)

CAGEr documentation built on Jan. 17, 2021, 2 a.m.