import.bedScore: import.bedScore

In CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Description

Imports a BED file where the score indicates a number of counts for a given alignment.

Usage

import.bedScore(filepath)

Arguments

filepath

The path to the BED file.

Value

A GRanges object where each line represents one nucleotide.

See Also

Other loadFileIntoGPos: bam2CTSS, import.CTSS, import.bam.ctss, import.bam, import.bedCTSS, import.bedmolecule, loadFileIntoGPos, moleculesGR2CTSS

Examples

# TODO: add exmaple file
# import.bedScore(system.file("extdata", "example.bed", package = "CAGEr"))

CAGEr documentation built on Jan. 17, 2021, 2 a.m.