TP53GenomicFeatures: Demo genomic features around the TP53 gene
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Details
Value
Author(s)
See Also
View source: R/TP53GenomicFeatures.R
Description
Build the genomic features of the TP53 demo region
Usage
1
Details
Returns a list of genomic features (gene, exons, transcripts) annotating
a region of UCSC hg19 sequence centered on the region of the TP53 gene, with 1 Mb flanking
sequence on each side. This is intended as a test/demonstration to run the NGS pipeline
in conjunction with the LungCancerLines data package.
Value
A list of GRanges objects containing the genomic features
Author(s)
Gregoire Pau
See Also
TP53Genome, buildGenomicFeaturesFromTxDb, runPipeline
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Details Value Author(s) See Also
View source: R/TP53GenomicFeatures.R
Description
Build the genomic features of the TP53 demo region
Usage
1 |
Details
Returns a list of genomic features (gene, exons, transcripts) annotating
a region of UCSC hg19 sequence centered on the region of the TP53 gene, with 1 Mb flanking
sequence on each side. This is intended as a test/demonstration to run the NGS pipeline
in conjunction with the LungCancerLines data package.
Value
A list of GRanges objects containing the genomic features
Author(s)
Gregoire Pau
See Also
TP53Genome, buildGenomicFeaturesFromTxDb, runPipeline
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.