getRRNAIds: Detect reads that look like rRNA
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Value
Description
Detect reads that look like rRNA
Usage
1
getRRNAIds(file1, file2 = NULL, tmp_dir, rRNADb)
Arguments
file1
FastQ file of forward reads
file2
FastQ of reverse reads in paired-end sequencing, NULL otherwise
tmp_dir
temporary directory used for storing the gsnap results
rRNADb
Name of the rRNA sequence database. Must exist in the gsnap genome directory
Value
IDs of reads flagged as rRNA
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
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Description Usage Arguments Value
Description
Detect reads that look like rRNA
Usage
1 | getRRNAIds(file1, file2 = NULL, tmp_dir, rRNADb)
|
Arguments
file1 |
FastQ file of forward reads |
file2 |
FastQ of reverse reads in paired-end sequencing, NULL otherwise |
tmp_dir |
temporary directory used for storing the gsnap results |
rRNADb |
Name of the rRNA sequence database. Must exist in the gsnap genome directory |
Value
IDs of reads flagged as rRNA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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