isAboveQualityThresh: Check for high quality reads

In HTSeqGenie: A NGS analysis pipeline.

Description

Checks whether reads have more than a fraction of minFrac nucleotides with a score below minquality.

Usage

isAboveQualityThresh(reads, minquality, minfrac)

Arguments

reads	A set of reads as ShortReadQ object
minquality	Minimal quality score
minfrac	Fraction of positions that need to be over minquality to be considered a good read.

Value

A boolean vector indicating whether read is considered high quality.

HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.