isSparse: isSparse
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Details
Value
Author(s)
Description
Check coverage for sparseness
Usage
1
Arguments
cov
A cov object as SimpleRleList
threshold
Fraction of number of runs over total length
Details
Some Rle related operations become very slow when they are dealing with
data that violates their sparseness assumption. This method provides an estimate about
whether the data is dense or sparse. More precicely it checks
if the fraction of the number of runs over the total length is smaller than a threshold
Value
Boolean whether this object is dense or sparse
Author(s)
Jens Reeder
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Check coverage for sparseness
Usage
1 |
Arguments
cov |
A cov object as SimpleRleList |
threshold |
Fraction of number of runs over total length |
Details
Some Rle related operations become very slow when they are dealing with data that violates their sparseness assumption. This method provides an estimate about whether the data is dense or sparse. More precicely it checks if the fraction of the number of runs over the total length is smaller than a threshold
Value
Boolean whether this object is dense or sparse
Author(s)
Jens Reeder
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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