markDuplicates: markDuplicates
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Details
Value
Author(s)
Description
Mark duplicates in bam
Usage
1
markDuplicates(bamfile, outfile = NULL, path = getOption("picard.path"))
Arguments
bamfile
Name of input bam file
outfile
Name of output bam file
path
Full path to MarkDuplicates jar
Details
Use MarkDuplicates from PicardTools to
mark duplicate alignments in bam file.
Value
Path to output bam file
Author(s)
Jens Reeder
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s)
Description
Mark duplicates in bam
Usage
1 | markDuplicates(bamfile, outfile = NULL, path = getOption("picard.path"))
|
Arguments
bamfile |
Name of input bam file |
outfile |
Name of output bam file |
path |
Full path to MarkDuplicates jar |
Details
Use MarkDuplicates from PicardTools to mark duplicate alignments in bam file.
Value
Path to output bam file
Author(s)
Jens Reeder
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.