mergeLanes: Merge input lanes

In HTSeqGenie: A NGS analysis pipeline.

Description

Merge input lanes built by the NGS pipeline

Usage

mergeLanes(indirs, outdir, prepend_str, num_cores, config_update,
  preMergeChecks.do = TRUE, ignoreConfigParameters)

Arguments

indirs	A character vector of directory paths containing NGS pipeline output
outdir	A character string pointing to a non-existing output directory
prepend_str	A character string, containing a prefix going to be appended on all output result files
num_cores	Number of cores available for parallel processing (for the merge bam step)
config_update	List of name value pairs that will update the config parameters
preMergeChecks.do	A logical, indicating whether to perform pre merge checks
ignoreConfigParameters	A character vector containing the configuration parameters that are not required to be identical

Value

Nothing

Author(s)

greg

HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.