preprocessReads: Pipeline preprocessing
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Details
Value
View source: R/preprocessReads.R
Description
The preprocessing for our NGS pipelines
consists of :
- quality filtering
- check for adapter contamination
- filtering of rRNA reads
- read trimming
- shortRead report generation of surviving reads
Usage
1
Details
These steps are mostly controlled by the global config.
Value
A named vector containg the path to the preproceesed
FastQ files and a few other statistics
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
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Description Usage Details Value
View source: R/preprocessReads.R
Description
The preprocessing for our NGS pipelines consists of : - quality filtering - check for adapter contamination - filtering of rRNA reads - read trimming - shortRead report generation of surviving reads
Usage
1 |
Details
These steps are mostly controlled by the global config.
Value
A named vector containg the path to the preproceesed FastQ files and a few other statistics
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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