preprocessReads: Pipeline preprocessing

Description Usage Details Value

View source: R/preprocessReads.R

Description

The preprocessing for our NGS pipelines consists of : - quality filtering - check for adapter contamination - filtering of rRNA reads - read trimming - shortRead report generation of surviving reads

Usage

1

Details

These steps are mostly controlled by the global config.

Value

A named vector containg the path to the preproceesed FastQ files and a few other statistics


HTSeqGenie documentation built on Nov. 2, 2018, 6:01 p.m.