runPipelineConfig: Run the NGS analysis pipeline
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Details
Value
Author(s)
Description
Run the NGS analysis pipeline from a configuration file
Usage
1
runPipelineConfig(config_filename, config_update)
Arguments
config_filename
Path to a pipeline configuration file
config_update
A list of name value pairs that will update the config parameters
Details
This is the launcher function for all
pipeline runs. It will do some
preprocessing steps, then aligns the reads,
counts overlap with genomic Features such as genes, exons etc
and applies a variant caller.
Value
Nothing
Author(s)
Jens Reeder, Gregoire Pau
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
R Package Documentation
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Description Usage Arguments Details Value Author(s)
Description
Run the NGS analysis pipeline from a configuration file
Usage
1 | runPipelineConfig(config_filename, config_update)
|
Arguments
config_filename |
Path to a pipeline configuration file |
config_update |
A list of name value pairs that will update the config parameters |
Details
This is the launcher function for all pipeline runs. It will do some preprocessing steps, then aligns the reads, counts overlap with genomic Features such as genes, exons etc and applies a variant caller.
Value
Nothing
Author(s)
Jens Reeder, Gregoire Pau
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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