| Atong | Systematic genetic analysis with ordered arrays of yeast... |
| AtongFnDomain | The functional domains shared by the tested pairs in Tong et... |
| AtongPair | Data frame the pair of yeast gene tested in Tong et al. 2004. |
| Boeke | Incidence matrix of Synthetic Lethal interaction from the... |
| byComplex | Evaluate protein co-membership within cellular organizational... |
| comemberIn | Retrieve the biological complexes. |
| compare | Compare observed data to expected in permutation models |
| congruence | Calculate congruence score between pairs of of genes sharing... |
| createSquareMatrix | Create a square matrix |
| domainDist | Finds the number of gene sets for each shared domain |
| dSLAM.GPL1444 | dSLAM platform used for Synthetic Lethal screens in the Boeke... |
| essglist | The list of yeast essential genes |
| getInteraction | Count genetic interactions within and between cellular... |
| getSharedDomains | Find domains shared by a given list of gene names. |
| getSharedInteraction | Calculate the number of shared synthetic genetic interactions... |
| getTestedPairs | Find interacting and non-interacting tested pairs from an... |
| getUniquePairs | Find unique pairs from an genetic interaction matrix. |
| gi2005 | Genetic Interaction Data (EMAP) from the yeast early... |
| gi2007 | Synthetic Genetic Interaction data from Collins et al |
| gi2Interactome | Reduce genetic interactions matrix |
| hyperG | Hypergeometric test |
| iSummary | Summarize cellular organizational units sharing genetic... |
| modelSLGI | Permutation model for assessing synthetic genetic... |
| normInteraction | Normalize a matrix of biological interactions |
| plot | Graphical method to represent the result of the modelSLGI . |
| SDL | The Association matrix for the synthetic dosage lethal... |
| seqMatcherAlign | Functions to do local alignment of two sequences using EMBOSS... |
| SGA | Systematic genetic analysis with ordered arrays of yeast... |
| SGD.SL | Interaction data from the Saccharomyces Genome Database |
| sharedBy | Find the gene pairs that share a domain. |
| sharedInt | List shared genetic interactions between genes |
| siResult-class | A class for representing the result of the SLGI graph... |
| test2Interact | Summarize genetic interactions within or between cellular... |
| TFmat | Transcription Factor Binding Affinities |
| topInteraction | Extract interacting biological complexes |
| twoWayTable | Generate two-way table for genetic interaction data |
| withinComplex | Search for protein co-membership within complexes. |
