sharedBy: Find the gene pairs that share a domain.
In SLGI: Synthetic Lethal Genetic Interaction
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
View source: R/getSharedDomains.R
Description
sharedBy finds whether the given domain is in each of the
elements of the domain list.
Usage
1
sharedBy(domainL)
Arguments
domainL
is a list, each element of the list is a vector of
domains.
Details
sharedBy first remove all the elements with length 0 or have
value 'NA'. Then apply the reverseSplit on the remaining list.
Value
A list with each element represent a domain, and the values of the
element are the pairs that share this domain.
Author(s)
Z. Jiang
See Also
reverseSplit, domainDist,
getSharedDomains
Examples
1
2
3
4
## Load PFAM and SMART domains shared between Tong's Synthetic lethal data
data(AtongFnDomain)
## Find pair that share identical domain
sharedBy(AtongFnDomain$SharedPfam[1:20])
SLGI documentation built on Nov. 8, 2020, 11 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/getSharedDomains.R
Description
sharedBy finds whether the given domain is in each of the
elements of the domain list.
Usage
1 | sharedBy(domainL)
|
Arguments
domainL |
is a list, each element of the list is a vector of domains. |
Details
sharedBy first remove all the elements with length 0 or have
value 'NA'. Then apply the reverseSplit on the remaining list.
Value
A list with each element represent a domain, and the values of the element are the pairs that share this domain.
Author(s)
Z. Jiang
See Also
reverseSplit, domainDist,
getSharedDomains
Examples
1 2 3 4 | ## Load PFAM and SMART domains shared between Tong's Synthetic lethal data
data(AtongFnDomain)
## Find pair that share identical domain
sharedBy(AtongFnDomain$SharedPfam[1:20])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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