gi2007: Synthetic Genetic Interaction data from Collins et al

In SLGI: Synthetic Lethal Genetic Interaction

Description

The data gi2007 are a 754 by 754 set of genetic interactions that were tested pairwise by either deletion or decreased abundance messenger RNA perturbation.

Usage

  data(gi2007)
  data(gi2007.metadata)

Format

The gi2007 data are a 754 by 754 matrix where values indicate a score for a synthetic genetic interaction. An NA indicates that the genetic interaction was not measured.

gi2007.metadata is a data.frame of dimensions 754 rows and two columns. The columns are the systematic names and the mutation (which is typically either DAMP, DELETION or the name of the alternate allele that was tested. In 11 cases an alternative allele was tested.

References

Collins et al. Nature, 2007, Vol 446, p. 806-810. Data are available as supplementary material.

Examples

data(gi2007)
data(gi2007.metadata)

SLGI documentation built on Nov. 8, 2020, 11 p.m.