normInteraction: Normalize a matrix of biological interactions
In SLGI: Synthetic Lethal Genetic Interaction

Description Usage Arguments Value Author(s) See Also Examples

Normalize a square matrix of biological interactions according to the number of possible interactions between each biological complex.

1	normInteraction(data, genename, interactome)

`data`	Square Matrix of biological complexes that shares one or more genes(proteins)
`genename`	Character vector of the gene names that possibly create interactions between complexes
`interactome`	Adjacency matrix where row are genes and columns are cellular organizational units. Each entry has value 0 or 1, for absence or presence of a gene in a complex, e.g., `ScISI`

Square matrix of biological complexes linked by one or more interacting proteins and normalized by the possible number of interactions between each complex.

N. LeMeur

getInteraction

data(Atong)
data(ScISIC)
data(SGA)
SLa2 <- gi2Interactome(Atong, ScISIC)
## Search for synthetic lethal interaction
compM <- getInteraction(SLa2, SGA, ScISIC)
## Normalize
normIntComplex<- normInteraction(compM$bwMat, SGA, ScISIC)