topInteraction: Extract interacting biological complexes
In SLGI: Synthetic Lethal Genetic Interaction
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/topInteraction.R
Description
Extract the top X interacting biological complexes.
Usage
1
topInteraction(data,top=10)
Arguments
data
Square matrix of biological complexes that shares one or
more genes(proteins)
top
Interger that represents the percentage of interacting complexe
Value
Data frame of biological complexes that interact. The first two
columns are the cellular organizational units names and the third
column indicates the number of interactions.
Author(s)
N. LeMeur
Examples
1
2
3
4
5
6
7
data(Atong)
data(ScISIC)
data(SGA)
SLa2 <- gi2Interactome(Atong, ScISIC)
## Search for synthetic lethal interaction
compM <- getInteraction(SLa2, SGA, ScISIC)
top10Interaction<- topInteraction(compM$bwMat,top=10)
SLGI documentation built on Nov. 8, 2020, 11 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/topInteraction.R
Description
Extract the top X interacting biological complexes.
Usage
1 | topInteraction(data,top=10)
|
Arguments
data |
Square matrix of biological complexes that shares one or more genes(proteins) |
top |
Interger that represents the percentage of interacting complexe |
Value
Data frame of biological complexes that interact. The first two columns are the cellular organizational units names and the third column indicates the number of interactions.
Author(s)
N. LeMeur
Examples
1 2 3 4 5 6 7 | data(Atong)
data(ScISIC)
data(SGA)
SLa2 <- gi2Interactome(Atong, ScISIC)
## Search for synthetic lethal interaction
compM <- getInteraction(SLa2, SGA, ScISIC)
top10Interaction<- topInteraction(compM$bwMat,top=10)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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