SDL: The Association matrix for the synthetic dosage lethal...

In SLGI: Synthetic Lethal Genetic Interaction

Description

The data reported in Table 6 of the supplementary data of Measday et. al.

Usage

       data(SDL)
       data(SLchr)

Format

SDL is a matrix with 141 rows and 9 columns. The columns represent 3 genes at each of 3 temperatures (16, 25, 37 Celsius). The gene names and temperatures are combined in the column names. The row names are yeast standard names. The values are NA, no effect, SDS for synthetic dosage sick, SL for synthetic lethal and SDL for synthetic dosage lethal.

SLchr is a matrix with 84 rows and 14 columns. Each column represents a query strain which was tested against the genome wide set of deletion strains. The entries can be NA for no effect, SL for synthetic lethal and SS for synthetic sick.

Source

Supplementary Table 6 of the reference given below.

References

Systematic yeast synthetic lethal and synthetic dosage lethal screens identify genes required for chromosome segregation. Measday et al, PNAS, 2005, 13956-13961.

Examples

data(SDL)
table(SDL)

SLGI documentation built on Nov. 8, 2020, 11 p.m.