twoWayTable: Generate two-way table for genetic interaction data
In SLGI: Synthetic Lethal Genetic Interaction

Description Usage Arguments Details Value Author(s) See Also Examples

Generate two-way table from a vector of genetic interaction status and a vector of the pairs that share a functional domain.

1	twoWayTable(var1, var2idx)

`var1`	Vector of the status of the first property.
`var2idx`	Vector of the index in `var1` that have the second property.

Calculates the count numbers from the given vectors. Then put them into a matrix format.

A two-way contingency table of genetic interaction and whether sharing a functional domain.

Z. Jiang

sharedBy, getUniquePairs

var1 <- c(0,1,1,0,0,0,1,0,1,1)
var2idx <- c(3,5,7)
twoWayTable(var1,var2idx)

data("AtongFnDomain")
pf <- Biobase::reverseSplit(AtongFnDomain$SharedPfam)
idx <- which(rownames(AtongFnDomain$pairs) %in% pf$PF00478)
twoWayTable(AtongFnDomain$pairs[,"interact"],idx)