getSharedInteraction: Calculate the number of shared synthetic genetic interactions...

In SLGI: Synthetic Lethal Genetic Interaction

Description

The number of common synthetic genetic interacting partners between two genes.

Usage

getSharedInteraction(iMat, mode="query")

Arguments

iMat	Adjacency matrix reporting genetic Interactions. Each entry has value 0 or 1, representing positive or negative interaction of corresponding pairs of row and column, respectively.
mode	Character vector of value "query" or "target"

Value

A numeric vector of the number of common genetic interactions between a pair of query or target genes.

Author(s)

N. LeMeur

See Also

congruence

Examples

intM <- matrix(c(0,1,0,0,1,1,1,0,1,0,0,1,1,0,1,0),
                nrow=4, ncol=4, 
                dimnames=list(c("p1","p2","p3","p4"),
                  c("p1","p3","p5","p7")))

sharedInt <- getSharedInteraction(intM)

SLGI documentation built on Nov. 8, 2020, 11 p.m.